GgaEX1032874 @ galGal4
Exon Skipping
Gene
ENSGALG00000007905 | LAMB1
Description
laminin, beta 1 [Source:HGNC Symbol;Acc:HGNC:6486]
Coordinates
chr1:14712542-14713578:-
Coord C1 exon
chr1:14713458-14713578
Coord A exon
chr1:14713101-14713289
Coord C2 exon
chr1:14712542-14712721
Length
189 bp
Sequences
Splice sites
3' ss Seq
GATTTTCACCTTTGTCACAGAGT
3' ss Score
6.49
5' ss Seq
AGCGTAAGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTCCATGGGCACTGCATGTGCAGGCATAATACCAAGGGCTTGAACTGTGAGCAGTGTTTGGATTTCTACCATGACTTACCTTGGCGACCTGCCGAAGGCCGCAATAGTAACGCATGCAAAA
Seq A exon
AGTGTAATTGCAATGGTCACTCCACGCAGTGCCACTTCGACATGGCCGTGTACATGGCGACAGGGAACACCAGCGGAGGGGTGTGTGACGACTGCCAGCACAACACAGTGGGGCGCAACTGCGAGCAGTGCAAGCCCTTCTACTTCCAGCACCCAGAGAGAGACCTACGGGACCCTGACGTCTGCGAGC
Seq C2 exon
CTTGTAATTGTGACCCAGCTGGCTCCCAAAATGGTGGCGTATGCGATCGCTACACTGACTTCTCTACGGGCCTCATTGCGGGCCAGTGCCGCTGTAAATTATTTGTCGAGGGGGAACGTTGTGATCTCTGCAAAGAAGGTTTCTATGGACTGAGTGCCGATGACCCATCGGGCTGTCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007905-'2-3,'2-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGGCTTGAACTGTGAGCA
R:
CGGCACTCAGTCCATAGAAACC
Band lengths:
248-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]