RnoEX0049250 @ rn6
Exon Skipping
Gene
ENSRNOG00000005678 | Lamb1
Description
laminin subunit beta 1 [Source:RGD Symbol;Acc:1306311]
Coordinates
chr6:50549087-50551277:+
Coord C1 exon
chr6:50549087-50549207
Coord A exon
chr6:50550634-50550822
Coord C2 exon
chr6:50551098-50551277
Length
189 bp
Sequences
Splice sites
3' ss Seq
ACATTGGTCTTGTCATGCAGAGT
3' ss Score
7.07
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
GTTCATGGGCACTGCATGTGCAGACACAACACTAAAGGCTTGAACTGTGAGCTGTGCATGGATTTCTACCACGATTTGCCGTGGAGACCTGCCGAAGGTCGGAACAGTAACGCCTGCAAAA
Seq A exon
AGTGTAACTGCAACGAACATTCCAGCTCGTGTCACTTTGACATGGCGGTCTTCCTGGCTACCGGCAATGTCAGCGGGGGAGTGTGTGATAACTGTCAGCACAACACCATGGGGCGCAACTGCGAGCAGTGCAAACCCTTCTACTTCCAGCACCCTGAGAGGGACATCCGGGACCCCAATCTCTGCGAAC
Seq C2 exon
CATGTACCTGTGATCCAGCTGGTTCTGAGAATGGAGGGATCTGTGACGGTTACACTGATTTTTCTGTGGGTCTCATTGCTGGTCAGTGTCGGTGCAAATTGCACGTGGAGGGAGAGCGCTGCGACGTCTGTAAAGAAGGCTTCTATGACCTGAGTGCTGAGGACCCGTTCGGTTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005678-'22-12,'22-9,23-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGTGAGCTGTGCATGGA
R:
GGTCCTCAGCACTCAGGTCAT
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]