MmuEX6080562 @ mm9
Exon Skipping
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31970491-31972923:+
Coord C1 exon
chr12:31970491-31970611
Coord A exon
chr12:31972281-31972469
Coord C2 exon
chr12:31972744-31972923
Length
189 bp
Sequences
Splice sites
3' ss Seq
ACTTTGGTCTTGTCACACAGAAT
3' ss Score
6.74
5' ss Seq
AACGTACGT
5' ss Score
9.51
Exon sequences
Seq C1 exon
GTTCACGGGCACTGCATGTGCAGACACAACACCAAAGGCCTGAACTGTGAGCTGTGCATGGATTTCTACCACGATTTGCCGTGGAGACCTGCTGAAGGCCGGAACAGCAACGCCTGCAAAA
Seq A exon
AATGTAACTGCAATGAACATTCCAGCTCGTGTCACTTTGACATGGCAGTCTTCCTGGCTACTGGCAACGTCAGCGGGGGAGTGTGTGATAACTGTCAGCACAACACCATGGGGCGCAACTGTGAACAGTGCAAACCGTTCTACTTCCAGCACCCTGAGAGGGACATCCGGGACCCCAATCTCTGTGAAC
Seq C2 exon
CATGTACCTGTGACCCAGCTGGTTCTGAGAATGGCGGGATCTGTGATGGGTACACTGATTTTTCTGTGGGTCTCATTGCTGGTCAGTGTCGGTGCAAATTGCACGTGGAGGGAGAGCGCTGTGATGTTTGTAAAGAAGGCTTCTACGACTTAAGTGCTGAAGACCCGTATGGTTGTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900-'17-14,'17-11,18-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACTGTGAGCTGTGCAT
R:
CCATACGGGTCTTCAGCACTT
Band lengths:
255-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: