DreEX6103070 @ danRer10
Exon Skipping
Gene
ENSDARG00000101209 | lamb1a
Description
laminin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-021226-1]
Coordinates
chr25:31188097-31193674:-
Coord C1 exon
chr25:31193554-31193674
Coord A exon
chr25:31189932-31190120
Coord C2 exon
chr25:31188097-31188273
Length
189 bp
Sequences
Splice sites
3' ss Seq
TTTATTTGCCTCTTCCACAGAGT
3' ss Score
8.98
5' ss Seq
AGCGTACGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTTCATGGTCATTGTATGTGTAATCATAACACTATCGGTCTGAACTGTGAACGCTGTCAGGACTTTTACCATGATCTGCCCTGGAGACCCGCTGAGGGACGCAACACCAATGCTTGTAAAA
Seq A exon
AGTGTCACTGCAACCATCACTCTCATTCGTGCCATTTTGACATGGCAGTTTACCGAGCCTCAGGGAACGTGAGCGGCGGCGTGTGCGATGACTGCCAGCACAACACTATGGGCCACAACTGCGAACAGTGCAAACCCTTCTTCCACCAGCATCCAGAGAAGGACATCCGCGACCCCAACATCTGCGAGC
Seq C2 exon
CCTGTAACTGTGATCCGGTTGGATCCCTCAATGGTGGCGTTTGCGACCCGATGACAGATGTGTCGCTTGGCCTGATCTCGGGTCAGTGCCGCTGTAAACCCAATGTGGAGGGTGAACGCTGCGACCAGTGCAAACAAGGCCATTACGGGCTGAGCGAAGACCCTCTGGGATGCCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101209-'9-11,'9-9,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGTCTGAACTGTGAACGC
R:
GTCTTCGCTCAGCCCGTAATG
Band lengths:
249-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]