MmuEX6085212 @ mm9
Exon Skipping
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:50873288-50875000:+
Coord C1 exon
chr11:50873288-50873543
Coord A exon
chr11:50874362-50874488
Coord C2 exon
chr11:50874905-50875000
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTTGTCTGTCCCTCACAGGTG
3' ss Score
9.48
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GGGCTGGAAAGTGCCTGCTGAGATGTGGTGAACAGTCTAAGGGTGTTCACATGGGAGCTCAGTGAGTCCCCTCGGTTATGGAGTACAGTGTCGCCTGAATCTTGCTTCTGGACATCCACGGACAAGAAGACTGGTGACTTGTCGATTCTCTGATGCCCACCCCCAGCTCCTGGTTCCCTCTCTTGAGGCAGAAGAGCCAGGCTCAGATGATGGGACACTTTCGGAGATGCTGCTTCTGACAGGTGCCGAGCAACAG
Seq A exon
GTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq C2 exon
GATTCCCGTTTACCAAACCAAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGGAAGGTGGAGGAAGAAGGCCCTGGAGGCTTCTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364-'1-7,'1-5,4-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCGCCTGAATCTTGCT
R:
CTTCCTCCACCTTCCAGGGAT
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: