MmuEX6085212 @ mm10
Exon Skipping
Gene
ENSMUSG00000020364 | Zfp354a
Description
zinc finger protein 354A [Source:MGI Symbol;Acc:MGI:103172]
Coordinates
chr11:51060072-51061498:+
Coord C1 exon
chr11:51060072-51060154
Coord A exon
chr11:51060860-51060986
Coord C2 exon
chr11:51061403-51061498
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTTGTCTGTCCCTCACAGGTG
3' ss Score
9.48
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ATCCTCCCTCATCTTCACCCATCTTTGGAAGAAGAACCTTCAGAAAGAAGATGGCTCCTGAGCAATGGGAAGCGACATCTCAG
Seq A exon
GTGTCGTTGACATTTGAAGACGTGGCCGTGCTCTTTACCCGGGATGAGTGGAAGAAGCTGGTTCCCTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAACTACAGCAACCTGGCCTCGCTGG
Seq C2 exon
GATTCCCGTTTACCAAACCAAAAGTGATCTCCCTGCTGCAGCAAGGAGAGGATCCCTGGAAGGTGGAGGAAGAAGGCCCTGGAGGCTTCTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020364-'1-9,'1-4,5-9=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCCTCATCTTCACCCAT
R:
CGAGAGAGAAGCCTCCAGGG
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types