RnoEX6047149 @ rn6
Exon Skipping
Gene
ENSRNOG00000003634 | Zfp354a
Description
zinc finger protein 354A [Source:RGD Symbol;Acc:2967]
Coordinates
chr10:36589181-36590641:+
Coord C1 exon
chr10:36589181-36589213
Coord A exon
chr10:36589940-36590066
Coord C2 exon
chr10:36590543-36590641
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTCATCTGTCCCTCACAGGTG
3' ss Score
8.37
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
ATGGCTCCTGAGCAAAGAGAAGGGGCCTCTCAG
Seq A exon
GTGTCAGTGACATTTGAAGATGTGGCTGTGCTCTTTACTCGGGACGAGTGGAAGAAGCTGGATCTGTCTCAGAGAAGCCTGTACCGTGAGGTGATGCTGGAGAATTACAGCAACCTGGCCTCCATGG
Seq C2 exon
CAGGATTCCTGTTTACCAAACCAAAGGTGATCTCCCTGTTGCAGCAAGGAGAGGATCCCTGGCAGGTGGAGAAAGAGGGCCCCAGATACTTCTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003634-'7-5,'7-3,8-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGAGCAAAGAGAAGGGG
R:
GAGAAGTATCTGGGGCCCTCT
Band lengths:
123-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]