MmuEX6088973 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94806682-94807232:+
Coord C1 exon
chr11:94806682-94806726
Coord A exon
chr11:94806814-94806912
Coord C2 exon
chr11:94807125-94807232
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCCCTTTCCTTCCTTTCTAGGGC
3' ss Score
12.95
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGTGTTCCTGGAGACCTTGGTGCCCCTGGACCCTCTGGCGCAAGA
Seq A exon
GGCGAGAGAGGTTTCCCTGGTGAACGTGGTGTACAAGGTCCCCCAGGTCCTGCTGGTCCCCGAGGAAACAATGGTGCCCCCGGCAACGATGGTGCCAAG
Seq C2 exon
GGTGATACTGGTGCCCCCGGAGCTCCCGGTAGCCAGGGTGCCCCCGGTCTTCAGGGAATGCCTGGTGAACGTGGTGCAGCTGGTCTTCCAGGTCCTAAGGGTGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'33-32,'33-31,34-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(53.8=97.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTCCTGGAGACCTTGGTG
R:
CTGTCACCCTTAGGACCTGGA
Band lengths:
151-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: