MmuEX6088977 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94804109-94804755:+
Coord C1 exon
chr11:94804109-94804216
Coord A exon
chr11:94804320-94804373
Coord C2 exon
chr11:94804657-94804755
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCCTTCTCCCTGCAGGGT
3' ss Score
14.09
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GGTGCTACTGGAGTTCAAGGTCCCCCAGGCCCTGCCGGAGAAGAAGGAAAACGAGGAGCCCGTGGTGAGCCTGGACCTTCCGGACTGCCTGGACCTCCTGGCGAGCGT
Seq A exon
GGTGGACCTGGTAGCCGTGGTTTCCCTGGTGCTGATGGTGTTGCTGGCCCCAAG
Seq C2 exon
GGTCCTTCCGGTGAACGTGGTGCTCCCGGACCTGCTGGTCCCAAAGGTTCTCCTGGTGAAGCTGGTCGCCCCGGTGAAGCTGGTCTCCCTGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'24-23,'24-22,25-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(25.8=47.2)
A:
PF0139113=Collagen=FE(25.8=100)
C2:
PF0139113=Collagen=PD(43.9=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGAGAAGAAGGAAAACG
R:
TCACCAGGAGAACCTTTGGGA
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: