GgaEX0028379 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23548453-23552520:+
Coord C1 exon
chr2:23548453-23548560
Coord A exon
chr2:23549441-23549494
Coord C2 exon
chr2:23552467-23552520
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAATTTGTATTCACTTGCAGGGC
3' ss Score
9.68
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGTGCTGCTGGCCCCCCTGGCCCTCCTGGTCCAAGTGGTGAGGAAGGCAAGAGAGGCAGCAATGGTGAACCTGGCTCTGCTGGTCCCCCTGGCCCTGCTGGTCTAAGA
Seq A exon
GGCGTGCCTGGATCTCGTGGTCTCCCTGGAGCTGATGGCAGAGCTGGTGTCATG
Seq C2 exon
GGTGCTCCTGGTCCTGAGGGAAACAACGGTGCTCAAGGTCCTCCTGGTGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-21/48=20-26
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(18.6=44.4),PF0139113=Collagen=FE(40.2=100)
A:
PF0139113=Collagen=PU(9.6=44.4)
C2:
PF0139113=Collagen=PD(11.6=44.4),PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTGGTGAGGAAGGCAAG
R:
AGTGACACCAGGAGGACCTTG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]