MmuEX6002795 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4520772-4521494:+
Coord C1 exon
chr6:4520772-4520879
Coord A exon
chr6:4521231-4521284
Coord C2 exon
chr6:4521396-4521494
Length
54 bp
Sequences
Splice sites
3' ss Seq
TCTCATGCCCTTTCCTGCAGGGC
3' ss Score
11.04
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GGCTCTGTTGGAGCCCAAGGTCCTCCTGGTCCCAGCGGTGAAGAAGGAAAGAGAGGGTCTCCCGGAGAAGCTGGATCTGCTGGCCCTGCAGGGCCTCCAGGGCTTAGA
Seq A exon
GGCAGCCCTGGTTCTCGAGGTCTTCCTGGAGCTGATGGCAGAGCTGGTGTAATG
Seq C2 exon
GGTCCTCCTGGCAATCGTGGTTCAACCGGCCCTGCTGGAATCCGAGGTCCTAATGGAGATGCCGGTCGACCTGGGGAACCTGGTCTCATGGGACCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'39-36,'39-35,40-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(35.4=100)
A:
PF0139113=Collagen=FE(17.2=100)
C2:
PF0139113=Collagen=PD(5.1=15.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCGGTGAAGAAGGAAAG
R:
CCGGCATCTCCATTAGGACCT
Band lengths:
143-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types