GgaEX0028379 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23719531-23723741:+
Coord C1 exon
chr2:23719531-23719638
Coord A exon
chr2:23720519-23720572
Coord C2 exon
chr2:23723688-23723741
Length
54 bp
Sequences
Splice sites
3' ss Seq
TAATTTGTATTCACTTGCAGGGC
3' ss Score
9.68
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
Exon sequences
Seq C1 exon
GGTGCTGCTGGCCCCCCTGGCCCTCCTGGTCCAAGTGGTGAGGAAGGCAAGAGAGGCAGCAATGGTGAACCTGGCTCTGCTGGTCCCCCTGGCCCTGCTGGTCTAAGA
Seq A exon
GGCGTGCCTGGATCTCGTGGTCTCCCTGGAGCTGATGGCAGAGCTGGTGTCATG
Seq C2 exon
GGCAACCAAGGTGCAAAGGGTGAAACAGGTCCTGCTGGCCCTCCTGGCTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-13/39=12-19
Average complexity
C2
Mappability confidence:
96%=100=93%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(20.8=44.4),PF0139113=Collagen=FE(38.5=100)
A:
PF0139113=Collagen=FE(18.7=100),PF0139113=Collagen=PU(16.2=66.7)
C2:
PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCCTCCTGGTCCAAG
R:
GGCCAGCAGGACCTGTTTC
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]