BtaEX6026247 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11640096-11640828:+
Coord C1 exon
chr4:11640096-11640203
Coord A exon
chr4:11640575-11640628
Coord C2 exon
chr4:11640730-11640828
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTTGTGTACTTTCTTACAGGGA
3' ss Score
11.11
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGTGCTGTTGGGCAGCCAGGTCCTCCTGGCCCCAGTGGTGAAGAAGGAAAGAGAGGCTCCACTGGAGAAATCGGACCCGCTGGCCCCCCAGGACCTCCTGGGCTGAGG
Seq A exon
GGAAATCCTGGCTCCCGTGGTCTACCTGGAGCTGACGGCAGAGCTGGTGTCATG
Seq C2 exon
GGTCCTGCTGGTAGCCGTGGTGCAACTGGCCCTGCTGGTGTGCGAGGTCCCAATGGAGATTCTGGTCGCCCTGGAGAGCCTGGCCTCATGGGACCCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'24-26,'24-24,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(14.9=55.6)
C2:
PF0139113=Collagen=FE(47.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGAGAGGCTCCACTGGA
R:
GCGACCAGAATCTCCATTGGG
Band lengths:
132-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]