MmuEX6089761 @ mm9
Exon Skipping
Gene
ENSMUSG00000035355 | Kcnh4
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4 [Source:MGI Symbol;Acc:MGI:2156184]
Coordinates
chr11:100606929-100608303:-
Coord C1 exon
chr11:100608059-100608303
Coord A exon
chr11:100607479-100607517
Coord C2 exon
chr11:100606929-100607281
Length
39 bp
Sequences
Splice sites
3' ss Seq
AATCCCCACTGTCTCCACAGGGC
3' ss Score
10.93
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GGAAGGGGGACTTGATTGGGGCAGACATCCCTGAGTTGGGACAGGAGCCTGGGTCAGGGGCAGGCCCCAGCTGTGTGCTGAAGACCAGCGCCGATGTGAAAGCTCTGACTTACTGTGGCCTGCAGCAGCTGAGCAGCCGAGGGCTGGCGGAGGTCCTGCGGCTGTATCCGGAATATGCAGCTGCCTTCCGGGCTGGCCTACCCCGGGACCTAACCTTCAACCTGCGCCAAGGTTCTGAAAACAAT
Seq A exon
GGCCTCGGCCGCTTCTCACGGTCTCCTCGTCTCTCCCAG
Seq C2 exon
GCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCATCCATCACAGAAACCGAGGGTGGCACGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCACCTGCTGCCCAACCTCAGTCCAGCACGACCTCGGGGGTCCCTGGTCAGCCTTTTGGGCGAGGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTCAGAGTCCCTCCCCGCACGGCCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCATTCCCCCACTGGGAACATTTGGACCTCCGGACCTCAGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035355-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=1.000 C2=0.941
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(58.2=69.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCCGGGACCTAACCTTC
R:
CACCCTCGGTTTCTGTGATGG
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: