BtaEX6088761 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001195 | KCNH4
Description
potassium channel, voltage gated eag related subfamily H, member 4 [Source:HGNC Symbol;Acc:HGNC:6253]
Coordinates
chr19:42925116-42926589:-
Coord C1 exon
chr19:42926357-42926589
Coord A exon
chr19:42925666-42925704
Coord C2 exon
chr19:42925116-42925468
Length
39 bp
Sequences
Splice sites
3' ss Seq
AACCCCTTGTGTCCCCGCAGGGC
3' ss Score
11.85
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GAAAAGGAGACCTGATTGGGGCAGATATCCCCGAGCCTGGGTCAGGCACAGCTCCAAGCTGCGTGCTGAAGACCAGTGCTGACGTGAAGGCACTCACCTACTGTGGCCTGCAGCAGCTGAGCAGCCAAGGGCTGGCTGAGGTCCTGAGGCTCTATCCTGAGTATGGAGCTGCCTTCCGGGCTGGCCTGCCCCGGGACCTCACCTTCAACCTGCGTCACGGCTCTGAGACCAAC
Seq A exon
GGCCTCTGCCGCTTTTCCCGGTCCCCTCGCCTCTCCCAG
Seq C2 exon
CCCCGCTCGGATAGCCTGGGCTCCTCCTCAGACAAGACCCAGCCATCCGTCACAGAGGCCGAGGCTGGGGCCGAGCCTGGCGGTGGTCCCAGGCCCCGGCGGCCCATCCTGCTGCCCAACCTCAGTCCAGCGCGGCCCCGGGGCTCCCTGGTCAGCCTCTTGGGGGAGGAGCTGCCCCCTTTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAGCCCCTTCCCCTGCCCTGGCTGGCCGGGGCCACAGCCCCTCCCCTCATGGCCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTTCTCATTCCCCCACTGGGAACCTTTGGACCTCCGGACCTCAGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001195-'13-16,'13-15,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.846 C2=0.907
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(56.4=67.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAGTATGGAGCTGCCTT
R:
TGGGTCTTGTCTGAGGAGGAG
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]