DreEX0040882 @ danRer10
Exon Skipping
Gene
ENSDARG00000062565 | kcnh4a
Description
potassium voltage-gated channel, subfamily H (eag-related), member 4a [Source:ZFIN;Acc:ZDB-GENE-131125-34]
Coordinates
chr3:17441279-17443799:+
Coord C1 exon
chr3:17441279-17441478
Coord A exon
chr3:17441726-17441764
Coord C2 exon
chr3:17443453-17443799
Length
39 bp
Sequences
Splice sites
3' ss Seq
GGATTTTCATTTCTCAACAGGGC
3' ss Score
8.84
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTAAAGGAGACCTGGTTGGTGCGGATCTGCCTGGGAAGGATCAGGTGATCAAAGCTAATGCGGATGTGAAGGCCCTGACTTACTGTGACTTACAGTACATCAGTGTTCGAGCGCTGCAGGAGGTTCTGGAGCTTTACCCTGAATACGGCAGCCGCTTCAATGAGGACATTCACCACAACCTCACCTACAACCTCAGAGAA
Seq A exon
GGCCAGGCCAGATTCTCCCGCTCAACTCGACTGGCACAG
Seq C2 exon
GAAAAATTTGACGAGTGCAAGCTGCCATTTATCGTGGAGACCGAACAAGAGGACGACACTGGGCAGGATTTAGGCAGGAGACCCCTGCTCTCTGGCTTCAGCTGCCCTTCATCTCAGTCCAATCTGAGTGCCATGCTAGGGGAGGAGTTTCGGCACCACAACATGCTCCGTTTCTGCAGATCGCCCGTCCAGAGCTCTCGCATACAGAGTCCTCAAATACCACTCCACGAGGAGCAGACGACGGCTTCAGCTCCTGTCCCAAAAACAGACAAGATCTCCTGCAACAGACCAGCCAAACTGCTTATTCCCACTCTCAACTGCGTCAGCCCGCTGGACCTGAGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062565-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.267
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=70.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGCTTCAATGAGGACAT
R:
GCCTAAATCCTGCCCAGTGTC
Band lengths:
127-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]