RnoEX6049702 @ rn6
Exon Skipping
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88652878-88654252:-
Coord C1 exon
chr10:88654014-88654252
Coord A exon
chr10:88653427-88653465
Coord C2 exon
chr10:88652878-88653230
Length
39 bp
Sequences
Splice sites
3' ss Seq
AATCCCCACTGTCTCCACAGGGC
3' ss Score
10.93
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAAAGGGGGACTTGATTGGGGCAGACATCCCTGAGTTGGGGCAGGAGCCTGGGGCAGGGGCAGGCTGCGTGCTGAAGACCAGCGCTGATGTGAAAGCACTGACTTACTGCGGCCTGCAGCAGCTGAGCAGCCGAGGGCTGGCCGAGGTCCTTCGGTTGTATCCGGAATATGTGGCTGCCTTCAGGGCTGGCCTACCCCGGGACCTAACCTTCAACCTGCGCCAAGGCTCTGAAAACAAT
Seq A exon
GGCCTCGGCCGCTTCTCACGTTCTCCTCGACTCTCCCAG
Seq C2 exon
GCACGCTCCGACACTCTTGGTTCCTCCTCAGACAAGACTCTGCCATCCATCACAGAAACCGAGGGTGGCATGGAGCCTGGGGCTGGTTCCAAGCCCCGTCGGCCCCTCCTGCTGCCCAACCTCAGTCCAGCACGACCTCGGGGGTCCCTGGTCAGCCTTTTGGGCGAAGAGCTGCCCCCATTCTCAGCCCTTGTCTCCTCTCCTTCCCTGTCCCCAACTCCTTCCCCTGCCCTGGCTGGCCGGGGTTCAAGTCCCTCCCTGCACGGGCCCCCCAGGGGCTCTGCTGCCTGGAAGCCCCCCCAGCTCCTCACCCCCCCACTGGGAACATTTGGACCTCCGGACCTCAGTCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.923 C2=0.907
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(57.3=68.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCCCGGGACCTAACCTTC
R:
CACCCTCGGTTTCTGTGATGG
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]