GgaEX6027542 @ galGal3
Exon Skipping
Gene
ENSGALG00000003354 | KCNH4
Description
NA
Coordinates
chr27:4500942-4503106:-
Coord C1 exon
chr27:4502892-4503106
Coord A exon
chr27:4501304-4501351
Coord C2 exon
chr27:4500942-4501225
Length
48 bp
Sequences
Splice sites
3' ss Seq
TCTCCAAATCTCTCTCGCAGGGG
3' ss Score
9.77
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GCAAAGGGGATCTGATCGGTGCCGACCTGGCCAGCAGGGACCCGGTGATCAAAACCAACGCGGACGTGAAGGCGCTGACCTACTGCGACCTGCAGTACATTGGGCTGCGGGGGCTGCGTGAGGTGCTGCAGCTCTACCCCGAGTATGCCAGCAAGTTCGCAGCGGACATCCACCAGGACCTCACCTTCAACCTGCGGGAGGGCAGCGAGATGGAG
Seq A exon
GGGCTCGGCCGCTTCGCCCGCTCCCCGCGCCTCTCGCAGGCATCGCAG
Seq C2 exon
TCGGACAGCGGCCCCGGCCCGGAGCAGTCCCTCCCCTGCATCGCGGAGGACGAGGAAGAGGCGGATGAGGTCTTCCAGCGATCGCCCCCCGCCGTCGCCCCCCGCGAACCGCTGCTGCCTCCACGTAGCAGCCCCGCGCGGCTCCCCGGCGCTCCTCGCGGAGACGAGCGCGGCATCCCCACGGCGCGGCCCCGGGGGGAGGCGGGGGGCGGCGGGGGACGGAGGGCGGCTCGGCTCCTCGGCCCCTCCCTGCACGCCCCTGGGCCCCCCGAACTCAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003354-'11-17,'11-15,13-17=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.938 C2=1.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PD(53.4=65.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATGCCAGCAAGTTCGCAG
R:
AAGACCTCATCCGCCTCTTCC
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]