MmuEX6092978 @ mm10
Exon Skipping
Gene
ENSMUSG00000042788 | Fam166b
Description
family with sequence similarity 166, member B [Source:MGI Symbol;Acc:MGI:2445194]
Coordinates
chr4:43427973-43429134:-
Coord C1 exon
chr4:43429028-43429134
Coord A exon
chr4:43428243-43428466
Coord C2 exon
chr4:43427973-43428169
Length
224 bp
Sequences
Splice sites
3' ss Seq
GGATGGATCCTGTGCTGCAGGTA
3' ss Score
5.18
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGAGTCCCTCCTGGAAGGGAAATAAAAGGAACTGCGCCAGTTCCCATGGCTGTGGTCAACACTTCCATCCCAGGGCTCAGCGGCGAGAATCCGCATTATATTCCAGG
Seq A exon
GTACACCGGACACTGCCCGCTACTTCGGTTCAGCATGGGCCAGACCTATGGGCAGGTGACTGGTCAGCTACTCCGAGGCCCTCCTGGTCTAGCCTGGCCTCCTGCCCACCGCACACTTCTGCCTCCCATCCAGTCTCCAAGATCTCCTGTGATCTCCAAGGGGAGGCTGCCTCCCAGGCGCGGGCATGAAAGGCTCAGCTCCAGCATAATCCCTGGGTATACAG
Seq C2 exon
GTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGTGGAAGAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042788-'1-4,'1-0,3-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.474 C2=0.642
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.7=28.6)
A:
PF106294=DUF2475=PD(88.7=72.4)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTGGAAGGGAAATAAAAGG
R:
ATGTGCCAACTCCTGCTTCAG
Band lengths:
299-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types