BtaEX6034182 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032509 | FAM166B
Description
Bos taurus family with sequence similarity 166, member B (FAM166B), mRNA. [Source:RefSeq mRNA;Acc:NM_001038513]
Coordinates
chr8:60197476-60198469:-
Coord C1 exon
chr8:60198377-60198469
Coord A exon
chr8:60197769-60197992
Coord C2 exon
chr8:60197476-60197681
Length
224 bp
Sequences
Splice sites
3' ss Seq
GGGTGAGACTTGTGCTGCAGGTA
3' ss Score
2.87
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
AAGAGAAACAAAAGGAACTGCCTGGGTCCCCTTGGCTATGGCCAGCACCTTCATACCAGGACTGAACCCCCAGAACCCTCATTATATCCCGGG
Seq A exon
GTACACTGGACACTGCCCACTACTTCGGTTCAGCATGGGCCAGACCTACGGACAGATGACTGGGCAGCTACTTCGCGGCTCTCCTGGCCTCGCCTGGCCCCCTGCCCACCGCACACTTCTGCCTCCCATTCAGCCTCCAAGATCCCCCGAGCCTCGCAGGAGAAGCCTGCCTGTCAGGCCTGGACACGAAAGGCTCAGCTCCAGCATGGTCCCCGGGTACACAG
Seq C2 exon
GTTTTGTGCCACAGGCACAGTTCATCTTTGCCAAGAACTGCAGCCAGGTCTGGGCTGAGGCTCTGAATGGTTTTACTCAGAGGAACGGAGGACAGGGGAGTCAGGAGCTGCCCAAAGAGGCCAAGGGAGAAAAAGATGTGGAGAAAGACCAAGAGCCAAAGCCGGAGGTGGAAAAGGAGCCGGAGCTGGGGCAGGAGGCGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032509-'0-3,'0-0,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.658 C2=0.681
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.5=31.6)
A:
PF106294=DUF2475=PD(88.9=73.7),PF106294=DUF2475=PU(13.4=11.8)
C2:
PF106294=DUF2475=PD(85.1=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAACAAAAGGAACTGCC
R:
TTGTTCCGCCTCCTGCCC
Band lengths:
299-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]