MmuEX6092978 @ mm9
Exon Skipping
Gene
ENSMUSG00000042788 | Fam166b
Description
family with sequence similarity 166, member B [Source:MGI Symbol;Acc:MGI:2445194]
Coordinates
chr4:43440845-43442006:-
Coord C1 exon
chr4:43441900-43442006
Coord A exon
chr4:43441115-43441338
Coord C2 exon
chr4:43440845-43441041
Length
224 bp
Sequences
Splice sites
3' ss Seq
GGATGGATCCTGTGCTGCAGGTA
3' ss Score
5.18
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
AGAGTCCCTCCTGGAAGGGAAATAAAAGGAACTGCGCCAGTTCCCATGGCTGTGGTCAACACTTCCATCCCAGGGCTCAGCGGCGAGAATCCGCATTATATTCCAGG
Seq A exon
GTACACCGGACACTGCCCGCTACTTCGGTTCAGCATGGGCCAGACCTATGGGCAGGTGACTGGTCAGCTACTCCGAGGCCCTCCTGGTCTAGCCTGGCCTCCTGCCCACCGCACACTTCTGCCTCCCATCCAGTCTCCAAGATCTCCTGTGATCTCCAAGGGGAGGCTGCCTCCCAGGCGCGGGCATGAAAGGCTCAGCTCCAGCATAATCCCTGGGTATACAG
Seq C2 exon
GTTTTATACCACGGGCACAGTTCATTTTTGCCAAGAACTGCAACCAGGTTTGGGCTGAAGCTATGAGTGAATTTACACGAAGGCACGGGGAGCAAGAGAGCCATCAACTGCCAGACGGAGCCAAGGGAGAGAGAGAAGTGGAAGAAGACCAGCTGCGGGAGGCAGAGGAGCCACCGCTGAAGCAGGAGTTGGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042788-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.482 C2=0.661
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.7=28.6)
A:
PF106294=DUF2475=PD(88.7=72.4),PF106294=DUF2475=PU(15.0=11.8)
C2:
PF106294=DUF2475=PD(83.3=75.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCCTGGAAGGGAAATAAAAGG
R:
ATGTGCCAACTCCTGCTTCAG
Band lengths:
299-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: