HsaEX0024125 @ hg19
Exon Skipping
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:34242]
Coordinates
chr9:35562872-35563896:-
Coord C1 exon
chr9:35563764-35563896
Coord A exon
chr9:35563163-35563386
Coord C2 exon
chr9:35562872-35563077
Length
224 bp
Sequences
Splice sites
3' ss Seq
TGGGAGAGTCTGTGCTGCAGGTA
3' ss Score
1.75
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
AGCCCTGGACACGGTACACACAGACCAGAGCCTTGGCTCAAAGGCAAACAAAAGGAAATGCCCGGCTCCCCATGGCTGTGGCCAGCACCTTCATACCAGGGCTCAACCCTCAGAACCCTCATTATATCCCAGG
Seq A exon
GTACACTGGACACTGCCCACTACTTCGGTTCAGCGTGGGCCAGACCTATGGGCAGGTGACTGGTCAGCTACTTCGAGGCCCTCCTGGCCTAGCCTGGCCCCCTGTCCACCGCACACTTCTGCCTCCCATTCGGCCTCCAAGATCTCCTGAGGTTCCCAGGGAGAGTCTACCTGTCAGGCGTGGGCAAGAAAGGCTCAGCTCCAGCATGATCCCTGGGTACACAG
Seq C2 exon
GTTTTGTACCCCGGGCACAGTTCATCTTTGCCAAGAACTGCAGCCAGGTCTGGGCCGAGGCTCTGAGTGACTTTACTCACTTGCATGAAAAGCAAGGGAGTGAAGAGCTACCAAAGGAGGCCAAGGGAAGAAAGGACACAGAGAAGGACCAGGTGCCAGAGCCGGAGGGGCAGCTGGAGGAGCCGACACTGGAGGTGGTGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.474 C2=0.616
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.4=28.6)
A:
PF106294=DUF2475=PD(89.1=75.0),PF106294=DUF2475=PU(12.9=11.8)
C2:
PF106294=DUF2475=PD(85.7=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAAAGGAAATGCCCGGCT
R:
TTGTTCCACCACCTCCAGTGT
Band lengths:
293-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)