GgaEX1023842 @ galGal4
Exon Skipping
Gene
ENSGALG00000008596 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr17:1864289-1867934:+
Coord C1 exon
chr17:1864289-1864344
Coord A exon
chr17:1865748-1865941
Coord C2 exon
chr17:1867648-1867934
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTTCCCTTTCCAGCTA
3' ss Score
11.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGGCAGCCCCCGGGCAGAGCCCACTCTTCCCTCCCCACCCGCACCACATCCCTGG
Seq A exon
CTATGAGGGCTTCCTCCCTCAGTACAACTACCAGTTTGGAGAGACCTATGGCAAAACCACGTACCGCCTGCTGACGGACCCACACATCCGGAGGAGCCCTCGCTCTGTGCTGGCACCGCTGTGCAAGCCGAGGTTCATTGAGGACTTCAGCGGGACACAGCACGGCCTGCAGCCCTTCCTCCCTGCACACCCAG
Seq C2 exon
GGTTCTTCCCCTATGACAGAGCCGGAGCTCTGACCAACTTCCCTGAAGCGGAGTTTGGGCCGAAGCCGCCCGCACCGGGGCCGGCAGAGCCCAATCTGACGCACACGGAGCCCCAGCATGGCCACGGCGGCTCAGGGCTGAGTGGGTGCCCACCCAGTGCGGCCTGGGACCCATCGGGGCCACCGCAGGGACAGGAGTGGCGGCTGCCCCCAATCCCTGAGGCCTGTGGGCATGGCACGTGGCACAGGGCTGGCGCAGCTGCAGGAACCAGGCAGGTGAGGCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008596-'1-2,'1-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.258 C2=0.854
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.5=31.6)
A:
PF106294=DUF2475=PD(88.9=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCTTCCCTCCCCACCC
R:
CCTCAGGGATTGGGGGCA
Band lengths:
256-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]