MmuEX6099429 @ mm10
Exon Skipping
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25216923-25220712:+
Coord C1 exon
chr2:25216923-25217023
Coord A exon
chr2:25220134-25220348
Coord C2 exon
chr2:25220453-25220712
Length
215 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGCTTCTCCCCACAGTTA
3' ss Score
12.1
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
ATTTTTAATGTAACTAAAAAAAAAATCACCTGAATTTATTTATTGTTGTTTTTTCCAGGCAAGGTTTCCTGGCTGTCCTGGAACTCTTCTCAGTAGACCAG
Seq A exon
TTATGCTGGTTTCTATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACCACTGCACAGTTGCTCACAGATCCCAGCGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGACCAAGCCCAAGTTCATTGAGGACTTCAGCAAATCCAAGCCACCATGGATTCCCTGCAGGGACCTGAGAGAGCCTTACATCCCCCACTATACCA
Seq C2 exon
GTCTGAAACCCTACAAGAATTTTGAGATCCTAGGCCAGCTCCCACGCCAGGATGTGGACACCCAGGGGCCGCCACAAGTAGAGAACAGACAGGGACCACTGACTGCAGGCTTCATGCCTTATCCACCCTACCCGGCATGCCCCCCAGGCAGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGGATGCAGCACCTCTTCAGGATACCCCAGGGAAGAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-'3-4,'3-1,8-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.151 C2=0.632
Domain overlap (PFAM):
C1:
NA
A:
PF106294=DUF2475=PD(89.6=82.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCAGGCAAGGTTTCCTGG
R:
GGGGTATCCTGAAGAGGTGCT
Band lengths:
294-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types