BtaEX6047524 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004095 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr11:105856512-105858727:+
Coord C1 exon
chr11:105856512-105856567
Coord A exon
chr11:105858160-105858374
Coord C2 exon
chr11:105858465-105858727
Length
215 bp
Sequences
Splice sites
3' ss Seq
TCGCCCTCTCGCCTCTGCAGCTA
3' ss Score
9.49
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
ATGACAGCCCCTCAGAAGCACAACCTCTTCTCGCCAGAACCTCACTACATCCCTGG
Seq A exon
CTATGCCGGCTTCTACCCGCAGCTGCGCTACCGGGTGGGGGACACCTACGGGCGCACCACGGCGCAGCTGCTCACAGACCCCAGCGTGCAGAAGAGCCCCTGCTCCGTGCTGGCCCCCGTGGCCAAACCCAAGTTCATCGAGGACTTCAGCAAGCCCAAGCCACCGTTTGTGCCCTGCCGTGACCTGATTGAGCCCTACATACCCCACTACACTG
Seq C2 exon
GTCTGAAGCCCTACAAGAACTTTGAGATGCTGGGCCGGTTCCCACCCCAGGAGGCGGATGCCCAGGGGTCCCTGGGGGGTGAGAATGTATCCAGGCAAGTCCCACTGCCTGCAGGCTTCATGCCCTATCCCCCTTACGCCCCCTGCCCTCCGGGCAGGAAGGGGGACTCCAGGGACCTTGGACACCCGGGGCTGCGGCTGGCATTAGGGGAAGAGGCCTGGAAGAGCACCGCCCCTGCCTGCGAGGCTCCCGGGCAATACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004095-'0-3,'0-1,1-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.068 C2=0.375
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=31.6)
A:
PF106294=DUF2475=PD(89.6=82.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCTTCTCGCCAGAACC
R:
GGTATTGCCCGGGAGCCTC
Band lengths:
297-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]