HsaEX0024124 @ hg19
Exon Skipping
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166, member A [Source:HGNC Symbol;Acc:33818]
Coordinates
chr9:140139759-140142222:-
Coord C1 exon
chr9:140142112-140142222
Coord A exon
chr9:140140091-140140305
Coord C2 exon
chr9:140139759-140140009
Length
215 bp
Sequences
Splice sites
3' ss Seq
TTCTTCTCTTCCCTCCACAGCTA
3' ss Score
12.14
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
AAGGGAGCTGGATGCCGGGAGGGACTGGAGCCAGCAAGGCCAGAGTGAAAGCAAAATGACAACTACTCAGAAACACGATCTCTTCACGCCGGAGCCTCACTATGTCCCTGG
Seq A exon
CTATGCCGGCTTCTTTCCGCAGCTGCGCTACCAGGTGGGGAACACCTATGGGCGTACCACGGGGCAGCTGCTCACAGACCCCAGTGTGCAGAAGAGCCCCTGCTCTGTGCTGTCCCCCATGTCCAAACCCAAGTTCATTGAGGACTTCAGCCAGTCCAAGCCCCCGAGGGTTCCCTGCCAAGACCTGACGGAGCCCTACATCCCCCACTACACCA
Seq C2 exon
GTCTGAAGCCCTCTAAGAACTTTGAGATTCTGGGCCAGCTCCCACCCTTGGAGGTGGACGCCCAGGAGCCGCCAGGGGTAGAGAACATACCCAGACAGATTCTGCTGCCTGCAGGCTTCACGCCCGACACCCCGCACCCTCCGTGCCCACCAGGCAGGAAGGGAGACTCCAGAGACTTGGGACACCCAGTATACGGGGAAGAGGCCTGGAAGAGCGCCACTCCTGTTTGCGAGGCCCCCAGGCAGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.569 C2=0.704
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=31.6)
A:
PF106294=DUF2475=PD(89.6=82.2)
C2:
PF106294=DUF2475=PD(89.6=32.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGCCAGAGTGAAAGCAA
R:
CAAACAGGAGTGGCGCTCTTC
Band lengths:
307-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)