MmuEX6099429 @ mm9
Exon Skipping
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25074265-25076232:+
Coord C1 exon
chr2:25074265-25074376
Coord A exon
chr2:25075654-25075868
Coord C2 exon
chr2:25075973-25076232
Length
215 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGCTTCTCCCCACAGTTA
3' ss Score
12.1
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
AGGGAAGGAAGGTGGACACAGAAAGGGCTGAACCAGCAAGGACAGAGTCAAAGCAAATGACAGCTACACAGAAACACAACCTCTTCACTCCAGAACCCCACTACATCCCTGG
Seq A exon
TTATGCTGGTTTCTATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACCACTGCACAGTTGCTCACAGATCCCAGCGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGACCAAGCCCAAGTTCATTGAGGACTTCAGCAAATCCAAGCCACCATGGATTCCCTGCAGGGACCTGAGAGAGCCTTACATCCCCCACTATACCA
Seq C2 exon
GTCTGAAACCCTACAAGAATTTTGAGATCCTAGGCCAGCTCCCACGCCAGGATGTGGACACCCAGGGGCCGCCACAAGTAGAGAACAGACAGGGACCACTGACTGCAGGCTTCATGCCTTATCCACCCTACCCGGCATGCCCCCCAGGCAGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGGATGCAGCACCTCTTCAGGATACCCCAGGGAAGAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.151 C2=0.586
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=31.6)
A:
PF106294=DUF2475=PD(89.6=82.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAGAAAGGGCTGAACC
R:
ATGCCAGCAGTAGACCTGGAT
Band lengths:
297-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: