GgaEX1023842 @ galGal3
Exon Skipping
Gene
ENSGALG00000008596 | FAM166A
Description
NA
Coordinates
chr17:2269726-2273273:+
Coord C1 exon
chr17:2269726-2269750
Coord A exon
chr17:2271154-2271347
Coord C2 exon
chr17:2273054-2273273
Length
194 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGTTCCCTTTCCAGCTA
3' ss Score
11.93
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCCCCACCCGCACCACATCCCTGG
Seq A exon
CTATGAGGGCTTCCTCCCTCAGTACAACTACCAGTTTGGAGAGACCTATGGCAAAACCACGTACCGCCTGCTGACGGACCCACACATCCGGAGGAGCCCTCGCTCTGTGCTGGCACCGCTGTGCAAGCCGAGGTTCATTGAGGACTTCAGCGGGACACAGCACGGCCTGCAGCCCTTCCTCCCTGCACACCCAG
Seq C2 exon
GGTTCTTCCCCTATGACAGAGCCGGAGCTCTGACCAACTTCCCTGAAGCGGAGTTTGGGCCGAAGCCGCCCGCACCGGGGCCGGCAGAGCCCAATCTGACGCACACGGAGCCCCAGCATGGCCACGGCGGCTCAGGGCTGAGTGGGTGCCCACCCAGTGCGGCCTGGGACCCATCGGGGCCACCGCAGGGACAGGAGTGGCGGCTGCCCCCAATCCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008596-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.258 C2=0.836
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.5=75.0)
A:
PF106294=DUF2475=PD(88.9=84.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGCACCACATCCCTG
R:
TCAGGGATTGGGGGCAGC
Band lengths:
239-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]