RnoEX0034185 @ rn6
Exon Skipping
Gene
ENSRNOG00000010019 | Fam166a
Description
family with sequence similarity 166, member A [Source:RGD Symbol;Acc:1562762]
Coordinates
chr3:2438439-2440113:+
Coord C1 exon
chr3:2438439-2438564
Coord A exon
chr3:2439535-2439749
Coord C2 exon
chr3:2439848-2440113
Length
215 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGCTTCTCTCCACAGCTA
3' ss Score
12.4
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
GCAACAGGTCTCTTCAGGGAAGGAAGGCGGACACAGAAAGGGCTGAACCAGCAAGGACAGAGTCAAGCAAATGACAGCTACTCAGAAACACAACCTCTTCACTCCAGAACCCCACTACATCCCTGG
Seq A exon
CTATGCTGGTTTCTATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACTACTGCACAGTTGCTCACAGATCCCAGTGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGTCCAAGCCCAAGTTCATTGAGGACTTCAGCAAATCCAAGCCACCATGGATGCCCTGCAGGGACCTGACAGAGCCTTACATCCCCCACTATACCA
Seq C2 exon
ATCTGAAACCCTACAAGAATTTCGAGATTCTGGGCAAGCTCCCACGCCAGGAGGTGGACACCCAGGGGATGCCACAGGGAGAGAACATATCCAGACATGTTCCACTACCTGCGGGCTTCATGCCTTATCCCCCCTACCCACCATGCCCTCCAGGCAGAAAGGGGGAAGCTAGAGACCTGGGCCATCCAGGTCTACTGCTGGCATATGGGGAAGAGGCTTGGAAGAATGCAGCACCTCTTCAGGAGACCCCAGGGAGGTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010019-'3-8,'3-5,7-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.404 A=0.164 C2=0.427
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=31.6)
A:
PF106294=DUF2475=PD(89.6=82.2)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000013335fB5191
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAGAAAGGGCTGAACC
R:
ATGCCAGCAGTAGACCTGGAT
Band lengths:
302-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]