MmuEX6094422 @ mm9
Exon Skipping
Gene
ENSMUSG00000066097 | Cyp2j11-ps
Description
cytochrome P450, family 2, subfamily j, polypeptide 11 [Source:MGI Symbol;Acc:MGI:2140224]
Coordinates
chr4:96006543-96015353:-
Coord C1 exon
chr4:96015043-96015353
Coord A exon
chr4:96011770-96011932
Coord C2 exon
chr4:96006543-96006692
Length
163 bp
Sequences
Splice sites
3' ss Seq
ACTATTGAAATGTTTTTCAGTTT
3' ss Score
6.36
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GATAGAAAGGCAGGCTTGGTTAGCCACGAACAAGCTGGAACTTAGCAGAGGGCTGTCAGTACTGTCAGGGGACTGGCACAGCTCAGACTCTCACCATGCTTGCTATTGCAACTTGCCTGGTGGCTAACATCTGCTCAGCAATCCATCTCTGGACTCTGCTTCTCACTCTTCTTACCTTGCTGCTCCTTGCTGACTACCTCAAAAACAGGCGCCCCAAGAACTATCCTCCAGGGCCCAGGCGCCTGCCATTTGTGGGCAACTTGTTCCAGTTTGATTTAGATGTGTCACGTCTGCATTTGGGGATCCAGCCG
Seq A exon
TTTGTGAAGAAGTATGGAAACGTAATTAGCGTGAATTTTGGTTACATTTCTTCAGTGATCATAAGTGGACTGCCCTTAATCAAAGAAGCTATCACTGGCATGGAACAAAACTTTTTGAAACGCCCCAGTTTAGCTGCAAGGCAACATGTATTTAAAAATAATG
Seq C2 exon
GCATTGTTTTTTCTAGTGGCCAGACATGGAAGGAGCAAAGAAAGTTCGCACTGACAATACTCAAGAATTTTGGATTAGGGAAGAAGAGCTTGGAGCAGTGTATACAAGAAGAGGCTTACCATCTTGTGAAGGCCATAGGAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066097-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(6.1=38.9)
A:
PF0006717=p450=FE(11.8=100)
C2:
PF0006717=p450=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATTGCAACTTGCCTGGTG
R:
TTTGCTCCTTCCATGTCTGGC
Band lengths:
249-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: