MmuEX6096147 @ mm10
Exon Skipping
Gene
ENSMUSG00000042446 | Zmym4
Description
zinc finger, MYM-type 4 [Source:MGI Symbol;Acc:MGI:1915035]
Coordinates
chr4:126870183-126882310:-
Coord C1 exon
chr4:126882215-126882310
Coord A exon
chr4:126877629-126877780
Coord C2 exon
chr4:126870183-126870294
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTCCCTTTCCACAGCCC
3' ss Score
11.6
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGGTGAACTTGCCTCTGCTAGTCCGTGTTCTGACTCCTTAGGAAGTGCTCAAGACCATGCCCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAG
Seq A exon
CCCGCTCTGTGAAACTGAAGGAAGATATTCTGTCCTGCACTTTTTCTGAGTTGAGTTTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCAAATGGTGAAAAGTATGACCCAGACAGTATCTTATACCTGTGCCTTGGAATTCAGCAG
Seq C2 exon
TACCTATTTGAAAATGGTAGAATAGATAACATTTTTACGGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042446-'57-56,'57-54,61-56
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAACTTGCCTCTGCTA
R:
CATTAGGAAGTATTGTAGGTTCCCA
Band lengths:
208-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types