GgaEX7010540 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr23:4303491-4306062:-
Coord C1 exon
chr23:4305891-4306062
Coord A exon
chr23:4304332-4304483
Coord C2 exon
chr23:4303491-4303602
Length
152 bp
Sequences
Splice sites
3' ss Seq
AATCATGTTCTTCACCACAGTTC
3' ss Score
7.09
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
Seq A exon
TTCGTCCTGTGAAACTCAAGGAGGACATTCTCTCGTGCACTTTTGCTGAGCTGAGTTTTGGCCTGTGCCAGTTTATTCAAGAGGTGCGGAGACCGAATGGAGAAAAATATGATCCTGACAGCATCTTATATTTGTGCCTTGGAATTCAGCAG
Seq C2 exon
TACCTGTTTGAGAATGGTAGAATAGATAACATTTTTACCGAGCCCTATTCCAGGTTTATGATTGAACTTACAAAACTTTTGAAAATCTGGGAACCTACAATTCTTCCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499-'40-47,'40-46,41-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGCCCCGCAATCTGATG
R:
TGGAAGAATTGTAGGTTCCCAGA
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]