BtaEX6019010 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110926373-110937583:-
Coord C1 exon
chr3:110937488-110937583
Coord A exon
chr3:110935123-110935274
Coord C2 exon
chr3:110926373-110926484
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTACCTTTCCACAGTCC
3' ss Score
10.59
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGTTGAACATGCCTCATCTAGCCCGTGTTCTGACCCATTAGGAAGTACTCAAGAGCATGCACTCTCTCAAGAATCTTCAGAGCCAGGCTGTAAAG
Seq A exon
TCCGCTCTATCAAGCTGAAGGAAGATATTCTGTCCTGCACTTTTGCTGAGTTGAGTTTAGGCTTATGCCAGTTTATTCAAGAAGTGCGGAGACCAAATGGTGAAAAATATGATCCAGACAGTATCTTATACTTGTGCCTTGGAATTCAGCAG
Seq C2 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023-'30-35,'30-32,31-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATGCCTCATCTAGCCCG
R:
CATTAGGAAGTATTGTAGGTTCCCA
Band lengths:
203-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]