DreEX6053328 @ danRer10
Exon Skipping
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14729085-14731613:-
Coord C1 exon
chr17:14731469-14731613
Coord A exon
chr17:14731169-14731320
Coord C2 exon
chr17:14729085-14729199
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACCCACTGTGCTTTATTCAGCAG
3' ss Score
5.36
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
GGTCGTAAGCGATCTGGAACGGACACGTCGAGCAGTGTTTGGCTCAGTACCTCCAGCTCCAAGCTCAACCAAACGTACGGCGTTGAAGCCTGGGCCAGCTGGGTGCGAATGAAAAGAGGCCACGCTGAGCAGGAGCAGCAGGCTC
Seq A exon
CAGAGCCCATGACCATGAAGGAGGATGTGTTGCAGTGCTCGTCTGCAGATCTCAGTTATGGTCTGTGCCGCTTTATCAAGGAGGTTCGCAGGCCGAATGGAGAAGAATATCAACCCGACAGCATCTACTACCTGTGCCTGGGCATTCAGCAG
Seq C2 exon
TGCCTGCTTGAAAACGAGCGTCTTGAGAACATCTTCACAGACCCACTGTATAATCAGTTCATCACCGACATCACCACACTGCTCAAGGACTGGGTCAACAAAGTGTCACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681-'26-39,'26-37,27-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.163 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTAAGCGATCTGGAACGGA
R:
GTTGACCCAGTCCTTGAGCAG
Band lengths:
242-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]