RnoEX0102048 @ rn6
Exon Skipping
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144885819-144896440:-
Coord C1 exon
chr5:144896345-144896440
Coord A exon
chr5:144891842-144891993
Coord C2 exon
chr5:144885819-144885930
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTCCCTTTCCACAGTCC
3' ss Score
11.43
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGGTGAACATGCCTCTGCTAGTCCCTGTTCTGACTCCTTAGGAAGTGCCCAGGACCAGGCTCTCTCTCAAGAATCCTCAGAGCAAGGCTGTAAAG
Seq A exon
TCCGCTCTATGAAACTGAAGGAAGATATTCTGTCCTGCACTTTTTCTGAGCTGAGTCTGGGCTTATGCCAGTTTATCCAAGAGGTGCGGAGACCCAATGGTGAAAAGTATGACCCAGACAGCATCTTATACCTGTGCCTTGGAATTCAGCAG
Seq C2 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACGGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAGCCTACAATACTTCCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397-'48-50,'48-48,50-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF120123=DUF3504=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAACATGCCTCTGCTAGT
R:
AGGAAGTATTGTAGGCTCCCA
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]