MmuEX6096161 @ mm10
Exon Skipping
Gene
ENSMUSG00000042408 | Zmym6
Description
zinc finger, MYM-type 6 [Source:MGI Symbol;Acc:MGI:106505]
Coordinates
chr4:127086975-127093083:+
Coord C1 exon
chr4:127086975-127087041
Coord A exon
chr4:127088329-127088554
Coord C2 exon
chr4:127092912-127093083
Length
226 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTCTTGTCTTGCTAGGCT
3' ss Score
8.91
5' ss Seq
CAAGTACAG
5' ss Score
0.24
Exon sequences
Seq C1 exon
GAATATGGACCTCAAGAAAGTGAACTAAAAATCAGTGCCGTGTTTTCAGCCGGTGACACTTCTCTCG
Seq A exon
GCTTTCAGGTTGGTCTACCGTCATCCGGCCCGAGTACATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAAAAACTGCTTCTTAAGGGACAACCTACCTACCGGAAGGCCGGATTTGCCCAGCTTTACTGCTCCATGGGATGCATCATCAGATTCTCCTCCGCAGTCTGCGTGCCACCTCTTCCCAAGAGAACCTGTGCACATTGCTCCAA
Seq C2 exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAGTTTGAAAATTCCTCTCTCTGCAAAGATTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCAGCAAAGTGCAGTATGTGTCAGAAGGGCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042408-'12-12,'12-9,20-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=PU(27.3=15.8)
C2:
PF064679=zf-FCS=PD(70.5=53.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGACCTCAAGAAAGTGAACT
R:
ATCAGTGCCCTTCTGACACAT
Band lengths:
236-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types