RnoEX0102077 @ rn6
Exon Skipping
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145148296-145154486:+
Coord C1 exon
chr5:145148296-145148362
Coord A exon
chr5:145149563-145149788
Coord C2 exon
chr5:145154315-145154486
Length
226 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTCTTGTCTTGATAGGTT
3' ss Score
10.13
5' ss Seq
CAAGTACAG
5' ss Score
0.24
Exon sequences
Seq C1 exon
GAATATGGACCTCAGGAAAGTGAACTAAAAATCAGTGCTGTGTTTTCAGCCAGTGACACTTCTCTTG
Seq A exon
GTTTTCAGGTTGGTCTACCATCCCCTGGCCTGAGTGCATCATTTCCTGCAGTTCCAGCTGCTCAAGTGTTTTGTTTTGGTTGTAAACAACTGCTTCGTAAGGGGCAGCCTACGTACCGTAAGGCAGGGTCTGCCCAGCTCTTCTGTTCCATGGGATGTGTCATCACGTTCTCCTCAGCGGTCTGCGTGCCTCCTCTTCCCAAGAGAACCTGCGCACACTGCTCCAA
Seq C2 exon
AGACATTTTAAATCCGATGGATGTGATCACAACTCAATTTGAAAATTCCTCTCTCTGCAAAGAGTTCTGCAGCCAGTCATGCCTATTTTCTTATGAGCTAAAGAAGCCTGTTGTTACCATATATACCAGTGGCATTTCTGCTAAGTGCAGTATGTGTCAGAAGGGCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF064679=zf-FCS=WD(100=53.9),PF064679=zf-FCS=PU(27.3=15.8)
C2:
PF064679=zf-FCS=PD(70.5=53.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGACCTCAGGAAAGTGAACT
R:
ATCAGTGCCCTTCTGACACAT
Band lengths:
236-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]