MmuEX6096229 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:127665101-127791007:+
Coord C1 exon
chr4:127665101-127665515
Coord A exon
chr4:127736206-127736422
Coord C2 exon
chr4:127790895-127791007
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTTTCTCTCTTCCAGGCC
3' ss Score
13.24
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAGAGCGCAGCGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCGGGATTTTTTTCCCCCCCTCCCGGAGCAGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTACAGAGCTCTCCTGACCTCCTTTCTCCTCGGCGGCGGGCGAAGCCTCTCCCTCGGGCTGCTGGCCGCGCTATGCCGCGCTCGCGGGGACCGGAGCAAGGATGTTGCGGCTGCCCGGCAGTGAGGGCTCGCGGCGAAATCGGGATTTGGGCGCTTGTGCCGGGTACCGGGAGTCGCTGGGGCCGCCCGCCGCCACCACCACCGCCGCCACCACCGCCGCCACCGCTGCTGCTGCTGCTGGGCTGGGGGCTGCTCAGTGCCTCGGCTGCCGCGG
Seq A exon
GCCAGAACTGCACATTCCACCTTCAGGGTCCCAATGGCACAGTGGAGAGCCCAGGGTTCCCTTACGGCTACCCGAACTACGCCAACTGCACGTGGACCATCACCGCGGAGGACCAGCACAGGATCCAGCTCGTGTTCCAGTCCTTTGCATTAGAGGAGGACTTTGATGTCCTATCAGTGTTTGATGGCCCACCCCAGGCAGAGAACCTTCGAACAAG
Seq C2 exon
GCTCACCGGCTTTCAGCTACCAGCCACCATAGTCAGTGCGGCCAGCACCTTGTCCCTGAGCCTCATCAGCGACTATGCAGTCAGTGCCCAGGGCTTCCGTGCCAGCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGAGCTCTCCTGACCT
R:
ACTATGGTGGCTGGTAGCTGA
Band lengths:
308-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: