GgaEX1017830 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4570631-4602780:+
Coord C1 exon
chr23:4570631-4571540
Coord A exon
chr23:4589514-4589730
Coord C2 exon
chr23:4602668-4602780
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTTTCTTTCACCAGCCC
3' ss Score
9.15
5' ss Seq
AAGGTATAT
5' ss Score
7.84
Exon sequences
Seq C1 exon
GCTCGGAGACAGGCACCGGGAGGGACGAGCCAGCCCTCCTCTCCTCGCCTCTCCTCTCCCCGAGCTGCTGCCACACTTGGTTCATTCCAGCTGCAGAAGCTCAGAGCCTTCCATGCGGTGGGTATTTTTTTTTTCCCTGGGCTAGAAAAAAAAATAAAATAAAAAAGAAATCGCAAGCCTGACCTGTCTTTTTTTTTTTTTTTTATTTCCCCCCCCTCCTCTTGCCTTTCTCCTCTTCTTCCAGCCGAGCCGAGGACTATCCCAATCGCAAAGGGGGAGAAAAAGGGGGGAAAATCCACCACCAACCAACCCCCAGCACGCCCCATTCCTGCCGCCCTTTGACATGCAACCTTCCTTGGGATGGGACCGGCCGGGATGCAGCTGCAGCCTCGGAAGGAACTGGGGGAAATTGGGGATCTTGGCTCTGATGACGGTGGAATGGAGCTCCTGGAGCCGGCTGCTGCTGCTCTCCGTGGGGCTGCTGGCTGCCTCCGCGAACG
Seq A exon
CCCAGAACTGCAGTCACATTTTGCACGGCCCCAATGGGACAATACAGAGTCCAGGCTTTCCATATGGATATCCAAATTATGCAAACTGCACGTGGACAATCACTGCTGAGGAGCAGAACAGGATACAGCTTGTTTTCCAGTCCTTTGCACTAGAGGAAGATTTCGATGTGTTATCTATCTACGATGGACTGCCTCAGCAGGGGAACCTGAGAACAAG
Seq C2 exon
GTTAACGGGTTTCCAGCTGCCTGCTCCTATTGTGAGTACGGGGGTCGTGCTGTCCTTGTGGCTTGTGAGTGACTACGCAGTCAGTGCTCAAGGCTTCCAGGCAAACTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=94.5)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCTCTTCTTCCAGCCGAG
R:
CTCACAATAGGAGCAGGCAGC
Band lengths:
308-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]