DreEX6073775 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:37001097-37087903:-
Coord C1 exon
chr19:37087167-37087903
Coord A exon
chr19:37052301-37052517
Coord C2 exon
chr19:37001097-37001209
Length
217 bp
Sequences
Splice sites
3' ss Seq
CTCTATTCTCCTCTCCACAGCTC
3' ss Score
10.91
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GGAATTAAACTTAAAGTCGCGCGCAGTGGAGGCGTACGCATATAGGCGGATGCCGCATCATCCATCCGAGTCGCTTTCCAGACTTTACCCGTTCACGTCAGCTTGAAGAGATCAGATACAGTTCTCCTTATCAGCTCTTCAGGTTTTAGGAGAGAACGCGTCTATTAGAATCGGCTCACCCCGCGGCTCGCTTGAGATGGTTCAGTCCAGCTGCGAGGGTCCAGTCTCCATGCACTGGGATTTTTCTCAGCGCCGACACCAAGTGAATCTTCCTTTTAAAACCATCTGATAACCGTGCCTGCCAAAAAAGCCCACCATGAGCGCCTCTTTGAATCCTGACAGAACGGGACTCGTGAGGACAGAGTGCAGATGTACATATAACGGGACAAGGAAACTGGATGGTATAAGGATTTTTGCGCTAATGAAGGTGGGAGTACAGGCGCATCACTGGAGCGGGGTGCTGTTCTTCTATATGGGGCTGCTGGCTGCATCGGTGAAGG
Seq A exon
CTCAAAACTGCAGTCACACGCTACACAGTCCAAATGGGACAATAGAAAGCCCCGGATACCCGTATGGATATCCCAACTACGCCAACTGCACATGGGTGATTGTGGCACAGGAACACAACCGGATACAGTTGGTATTTCAAGGCTTTGCCTTAGAGGAGGACTTTGACATCCTTTCAGTCTACGATGGGCAACCCAGTCCCACAAACTTACGGACACG
Seq C2 exon
GTTGACGGGGTTTCAACTTCCAGCCCCTATAGTGAGCACAGGCCCCAGACTCACATTATGGTTGCTGTCAGACTATGCCGTAAGTGGCCAGGGATTCAAAGCCGTGTACGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=94.5)
C2:
PF0043115=CUB=PD(34.0=92.3)

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGACACCAAGTGAATCTT
R:
CCTGTGCTCACTATAGGGGCT
Band lengths:
292-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]