MmuEX6096229 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:127987857-128113763:+
Coord C1 exon
chr4:127987857-127988271
Coord A exon
chr4:128058962-128059178
Coord C2 exon
chr4:128113651-128113763
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTGCCCTTTCTCTCTTCCAGGCC
3' ss Score
13.24
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GAGAGCGCAGCGCGCCTCTCCCCGGCCGGGCGGACACTTGGTTCATTCCAGCCGCAGAAGCTCAGGGCTCCCGCGTACCGGGATTTTTTTCCCCCCCTCCCGGAGCAGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTACAGAGCTCTCCTGACCTCCTTTCTCCTCGGCGGCGGGCGAAGCCTCTCCCTCGGGCTGCTGGCCGCGCTATGCCGCGCTCGCGGGGACCGGAGCAAGGATGTTGCGGCTGCCCGGCAGTGAGGGCTCGCGGCGAAATCGGGATTTGGGCGCTTGTGCCGGGTACCGGGAGTCGCTGGGGCCGCCCGCCGCCACCACCACCGCCGCCACCACCGCCGCCACCGCTGCTGCTGCTGCTGGGCTGGGGGCTGCTCAGTGCCTCGGCTGCCGCGG
Seq A exon
GCCAGAACTGCACATTCCACCTTCAGGGTCCCAATGGCACAGTGGAGAGCCCAGGGTTCCCTTACGGCTACCCGAACTACGCCAACTGCACGTGGACCATCACCGCGGAGGACCAGCACAGGATCCAGCTCGTGTTCCAGTCCTTTGCATTAGAGGAGGACTTTGATGTCCTATCAGTGTTTGATGGCCCACCCCAGGCAGAGAACCTTCGAACAAG
Seq C2 exon
GCTCACCGGCTTTCAGCTACCAGCCACCATAGTCAGTGCGGCCAGCACCTTGTCCCTGAGCCTCATCAGCGACTATGCAGTCAGTGCCCAGGGCTTCCGTGCCAGCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'0-4,'0-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.055 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0043115=CUB=PU(65.1=94.5)
C2:
PF0043115=CUB=PD(34.0=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACAGAGCTCTCCTGACCT
R:
ACTATGGTGGCTGGTAGCTGA
Band lengths:
308-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types