MmuEX6097653 @ mm9
Exon Skipping
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141377617-141381539:-
Coord C1 exon
chr4:141381445-141381539
Coord A exon
chr4:141378145-141378242
Coord C2 exon
chr4:141377617-141377745
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTCCATCCCCCTCCCCCAGGTC
3' ss Score
11.65
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CCCTCAGCTGTGGGTACCCCACTTATGAGGTGGAGGATGATGTGAGCAGGGTAGTTGGGGGTCAAGAGGCCACACCCAACACCTGGCCCTGGCAG
Seq A exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
Seq C2 exon
CAACTATCAGACCTACCGAGTGCTGCTGGGCGCACACAGCCTCTCCAACCCCGGAGCTGGCTCTGCTGCTGTTCAAGTCTCTAAGCTTGTGGTCCACCAGAGGTGGAACTCCCAAAACGTCGGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-'1-2,'1-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=43.8)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTAGTTGGGGGTCAAGA
R:
ATTGCCGACGTTTTGGGAGTT
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: