DreEX0029634 @ danRer10
Exon Skipping
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25516274-25518500:-
Coord C1 exon
chr5:25518412-25518500
Coord A exon
chr5:25516572-25516669
Coord C2 exon
chr5:25516274-25516402
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTGTCCCATTATTAGGTC
3' ss Score
8.36
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CCTTTGGGTGTGGAAAACCACCCATTGAGCCTCTCATGTCTCGTGTGGTCAATGGAGAGGAAGCAAGACCTCACAGCTGGCCCTGGCAG
Seq A exon
GTCTCTCTGCAGTATCAGAGTGGAAGCTCATTTTACCACACCTGCGGAGGATCTATCATTGCTGAAAACTGGGTGATGACTGCTGCTCACTGCATCAG
Seq C2 exon
TTCTGGCCGCAACTACAGAGTGCTAGTTGGCAAGCATGACCTGTCAGTAAATGAGGAAGGATCCCAGACCATCAGCGCACAGAAGATCATTGTACACGAGAAATGGAACTCAATGTTTGTTGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAACCACCCATTGAGCC
R:
GATCTTCTGTGCGCTGATGGT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]