BtaEX6069749 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53299035-53300605:-
Coord C1 exon
chr16:53300514-53300605
Coord A exon
chr16:53300318-53300415
Coord C2 exon
chr16:53299035-53299160
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTTCCACATCCCCCCCCAGATC
3' ss Score
9.62
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CCTCCAGCTGCGGGGCCCCCATCTTCCAGCCCAACCTATCAGCCCGCGTGGTGGGAGGAGAGGACGCCATTCCCCACAGCTGGCCCTGGCAG
Seq A exon
ATCTCCCTCCAGTACCTCAGGGATAACACGTGGAGGCACACCTGTGGCGGCACCCTGATCACCCCCAACCACGTGCTCACAGCTGCCCACTGCATCAG
Seq C2 exon
CAACACCCTGACCTACCGCGTGGCCCTGGGGAAGAACAACCTGGAGGTGGAGGACGAGGCAGGCTCCCTCTACGTGGGTGTGGACACCATCTTTGTCCATGAAAAGTGGAACTCCTTCCTAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=45.2)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCCCAACCTATCAGC
R:
TCCACTTTTCATGGACAAAGATGGT
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]