GgaEX6024231 @ galGal3
Exon Skipping
Gene
ENSGALG00000013701 | F1P457_CHICK
Description
NA
Coordinates
chr21:4996181-4996662:-
Coord C1 exon
chr21:4996571-4996662
Coord A exon
chr21:4996374-4996471
Coord C2 exon
chr21:4996181-4996303
Length
98 bp
Sequences
Splice sites
3' ss Seq
GACTCCGTGCCGCCGTCCAGATC
3' ss Score
4.75
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
CCTATGGATGTGGGCAGCCAGCGGTGCCACCGCTGTTAGGCGCTCGCGTGGTGGGCGGTGAGGACGCCCGTGCTCACAGCTGGCCATGGCAG
Seq A exon
ATCTCACTGCAGTACAGCCGCGATGGAGCCTGGAGGCACACCTGTGGAGGAACCCTCATTTCCCCCAGCTGGGTGCTGACGGCCGCACACTGCATCAG
Seq C2 exon
CTCCTCCCTGACGTACCGCGTGGTGCTGGGCGAGCACAACCTGGCAGTGGAGGACGACGGCGCGGTGGTGGCTGAGGTGGAGAAGATCGTTGTGCACGAGAAGTGGAACTCCTTCCTCATCGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013701-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(7.4=45.2)
A:
PF0008921=Trypsin=FE(16.8=100)
C2:
PF0008921=Trypsin=FE(21.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCCACCGCTGTTAGG
R:
GGAGTTCCACTTCTCGTGCAC
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]