MmuEX0013102 @ mm9
Exon Skipping
Gene
ENSMUSG00000062478 | Ctrc
Description
chymotrypsin C (caldecrin) [Source:MGI Symbol;Acc:MGI:1923951]
Coordinates
chr4:141399650-141401187:-
Coord C1 exon
chr4:141401097-141401187
Coord A exon
chr4:141400916-141401013
Coord C2 exon
chr4:141399650-141399711
Length
98 bp
Sequences
Splice sites
3' ss Seq
GACTCAAGGTCCTTCTGCAGGTC
3' ss Score
5.05
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTCCAGCTGTGGGGACCCCACCTTCCCACCCAACCTGTCAGCCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAAAGCTGGCCTTGGCAG
Seq A exon
GTCTCTCTTCAGTACCTCAGGGATGACACTTGGAGGCACACCTGTGGGGGCAGTCTCATCACCACCAGCCACGTCCTCACTGCTGCCCACTGCATCAA
Seq C2 exon
CACAAACTTGACCTACCGCGTGGGCCTGGGGAAGTATAACCTGACAGTGGAGGATGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062478-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(2.1=12.9)
A:
PF0008921=Trypsin=FE(13.8=100)
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACCTTCCCACCCAA
R:
TCCTCATCCTCCACTGTCAGG
Band lengths:
135-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: