DreEX6049600 @ danRer10
Exon Skipping
Gene
ENSDARG00000056744 | ela2
Description
elastase 2 [Source:ZFIN;Acc:ZDB-GENE-041117-1]
Coordinates
chr8:21344405-21347744:+
Coord C1 exon
chr8:21344405-21344493
Coord A exon
chr8:21347388-21347485
Coord C2 exon
chr8:21347619-21347744
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCATCTCCTCAATATTTCAGGCA
3' ss Score
7.43
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
CCTACGGTTGTGGGCAGCCCACCTACAAACCCATCGACTCGAGAGTGGTGGGAGGAAGTGATGTCAGACCCAACAGCTGGCCATGGCAG
Seq A exon
GCATCTCTCCAGTACCAGAGTGGCTCCAGCTTTTACCACACCTGTGGTGGCACCTTGATCGACAAGCAGTGGGTCTTGACCGCTGCTCACTGCATTAG
Seq C2 exon
CAGCAGCCGAACTTACAGAGTCTTACTGGGCAAGCACAACCTGCCACTCAGCAGCGAGTCCGGCTCTCAGGCCATCTCTCCTGCCAGGATTATCGTTCATGAGAACTGGGACTCCTACAATATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056744-'1-2,'1-1,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=46.7)
A:
PF0008921=Trypsin=FE(13.8=100)
C2:
PF0008921=Trypsin=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCACCTACAAACCCATC
R:
TCATGAACGATAATCCTGGCAGG
Band lengths:
177-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]