RnoEX6024317 @ rn6
Exon Skipping
Gene
ENSRNOG00000013745 | Ctrc
Description
chymotrypsin C [Source:RGD Symbol;Acc:1308379]
Coordinates
chr5:160400511-160402311:-
Coord C1 exon
chr5:160402220-160402311
Coord A exon
chr5:160402039-160402136
Coord C2 exon
chr5:160400511-160400636
Length
98 bp
Sequences
Splice sites
3' ss Seq
GATGTGCGGTCCTTCTGCAGGTC
3' ss Score
10.65
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CCTCTTGCTGCGGGAACCCCGCCTTCCCACCTAACCTGTCAACCAGAGTGGTAGGAGGAGAGGATGCTGTCCCCAACAGCTGGCCTTGGCAG
Seq A exon
GTCTCTCTCCAGTACCTCAAGGACGACACATGGAGGCACACCTGTGGGGGAAGTCTCATCACCACCAGCCACGTCCTCACTGCCGCCCACTGCATCAA
Seq C2 exon
CAAAGACTTCACTTACCGTGTGGGCCTGGGGAAGTATAATCTGACAGTGGAGGATGAGGAAGGCTCCGTGTACGCTGAGGTGGACACCATCTACGTCCATGAGAAGTGGAACCGACTCTTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013745-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=45.2)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCACCTAACCTGTCAACCA
R:
CGGTTCCACTTCTCATGGACG
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]