DreEX0029629 @ danRer10
Exon Skipping
Gene
ENSDARG00000056765 | ela2l
Description
elastase 2 like [Source:ZFIN;Acc:ZDB-GENE-040511-1]
Coordinates
chr8:21338716-21340361:-
Coord C1 exon
chr8:21340307-21340361
Coord A exon
chr8:21339117-21339214
Coord C2 exon
chr8:21338716-21338838
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTGTTCTTCATCCAGATC
3' ss Score
10.75
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
ACTGAAGATACAAGGATGATGAAGTTTGTGGTCTTGGCTGTTCTGGTTGTCGGAG
Seq A exon
ATCTCCCTCCAGTACAAAAGTGGAAGCAACTGGTACCACACTTGCGGTGGAAGCCTTATTGACAAACAGTGGGTTTTGACTGCCGCTCACTGCATCAG
Seq C2 exon
CAGTAGCAGAACTTACAGAGTGTTTTTGGGAAAACATAGCCTGAGCCAGGAGGAGAACGGCTCTGTCGCTATTGGTGCTGGAAAGATCATTGTCCACGAGGCTTGGAACTCCTTCACAATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056765-'0-3,'0-2,2-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=FE(13.8=100)
C2:
PF0008921=Trypsin=FE(17.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGGATGATGAAGTTTGTGGTCT
R:
GATTGTGAAGGAGTTCCAAGCCT
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]