HsaEX0017913 @ hg19
Exon Skipping
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C (caldecrin) [Source:HGNC Symbol;Acc:2523]
Coordinates
chr1:15766796-15769068:+
Coord C1 exon
chr1:15766796-15766887
Coord A exon
chr1:15766989-15767086
Coord C2 exon
chr1:15768943-15769068
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCACCCTCCTGCAGATC
3' ss Score
11.5
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
CCTCCAGCTGTGGGGTGCCCAGCTTCCCGCCCAACCTATCCGCCCGAGTGGTGGGAGGAGAGGATGCCCGGCCCCACAGCTGGCCCTGGCAG
Seq A exon
ATCTCCCTCCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCTCACTGCCGCCCACTGCATCAG
Seq C2 exon
CAACACCCGGACCTACCGTGTGGCCGTGGGAAAGAACAACCTGGAGGTGGAAGACGAAGAAGGATCCCTGTTTGTGGGTGTGGACACCATCCACGTCCACAAGAGATGGAATGCCCTCCTGTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(6.0=45.2)
A:
PF0008921=Trypsin=FE(13.7=100)
C2:
PF0008921=Trypsin=FE(18.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGTGGGAGGAGAGGATG
R:
ACAGGAGGGCATTCCATCTCT
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)